Many times it comes down to burn rate vs bullet weight/length and finding the node based on that.
Many times when people struggle to get a certain powder to work where they can get another to work fine, it's usually due to differences in the burn rate.
I've done a ton of different load development methods over the years and what I've found seems to work the most consistently for me and reliably is the optimal barrel time method.
In order for this to work, you need to get to a particular dwell time that the bullet is in the barrel (or time it takes for the bullet to exit the barrel once fired), so that the harmonics/whip is consistent and stable and the muzzle is pointed to exactly the same point each time.
So, in order to get to that particular barrel time, it takes getting whatever bullet you're using to that time by tweaking the powder charge, type of powder (burn rate) and other things that affect burn rate and pressure such as the particular primer, primer seating depth, neck tension, seating depth, shoulder bump, etc, etc.
With all that said, if the faster burning powders are working better for you, that would mean you'd need to push it faster (higher pressure) with the H1000 to get the same result. You could do this by a mixture of things too. Using a primer with a more intense flame column would increase the pressure curve and actual rate of burn. Bumping shoulders more, seating the bullet deeper, etc would all help as well.
H1000 is a great temp stable powder, and I'd say your issue is likely just not putting yourself in the right combo of things to get you in a node with it, but if you don't want to mess with it and are happy with the results of the other powders, just keep doing what's already working. If you really do want to use it, and want it to work, try doing what you need to to get the pressures and barrel time to match like I was saying and you should start to see success.