RDG, Jeff might have somthing with the carbon fouling, but this assumes you were not cleaning your barrel all that well. I believe the FF instructions tell you to start with a clean barrel and to clean between every abrasive coated bullet.
I guess part of this comes down to how many rounds were down the tube before you FF? Or did you do this to smooth out a newer rough factory barrel? Did you use all the bullets in the kit? Was your intentions to make the barrel clean easier, or increase accuracy, or breathe new life in a well used tube?
If it was a well used barrel, the throught was probably aligator skinned, and may have had a build up of stuborn carbon and copper within the checkering.
Either way if you remove 3-5 ten-thousandths of an inch from your bore dia. even if it's only in the first few inches of the bore, the bullets will likly "slide" or engrave into the lands a little easier and with less pressure, causing a velocity drop.
You may have differing accuracy results with bullets of thin versus thick jackets. Barnes and failsafes may not shoot as well as thinner jacket bullets. But this again depends on what happened internally when you FF the bore.
Let us know how the accuracy changed, I am curious to see what happens.