Well, it doesn't help to have variations.
You will have to take a close look at performance and determine the need to chase the root cause down.
For example, if you are happy with the ammo performance, keep going. If not, then you have to determine if the cause is due to this seating force variation, or any number of other reasons.
A good starting point is to watch the group size while also taking chrono data. If the flyers are also the same as the ones that have extremes of velocity, then you will need to determine if those seating forces are the cause. Unfortunately the easy way to do this isn't cheap. Those pressure or force gage arbor presses are not cheap, but if a sort on those forces correlates to your group problem, then you can get to work on brass prep technique.
Many things can give this perception and large lever presses are not known for their sensitivity. If you can feel it on a large lever press, it is probably significant. The anneal state of the brass, the chamfer workmanship, the finish and cleanliness, etc, can all cause variations in seating forces.
What is the state of your brass and prep? Are these cases with many cycles? Annealed? Trimmed and chamfered?