Welcome aboard ...........
The gun and ballistic chart are zero'd at 200 yards, and I've calculated (using a calculator) how many clicks to move the turret. For example: (with zero at 200yards) 400 yards is a 25.3 inch drop, and a 6.0 minute of angle drop, which means 24 clicks in my 1/4 moa click scope. However, that's incorrect and it's actually 4 inches low which equals 20 clicks. What have I missed? At 500 yards the clicks are exactly what the ballistic table says it is. 10.1 moa low and 40 clicks puts me dead on at 500 yards. I tried it, but why did I have that issue at 400 yards, and a similar issue at 300 yards?
"400 yards is a 25.3 inch drop, and a 6.0 minute of angle drop" - it's actually 6.6 MOA (25.3*1.047/4) which would be 26 "clicks".
1 MOA is 1 MOA at 100 yards and 1 MOA at 400 yards or at any other yards. If you want to avoid confusion, get the inches and clicks out of the equation. 20 "clicks" on a MOA turret will equal 5 MOA. If you count "clicks" you'll make a mistake - the click stops are usually soft and difficult to feel so missing one or more can make a big difference. Just read the turret adjustment knobs in MOA.
Try to understand this about scopes and ballistics charts.
Scopes don't always adjust precisely to the specs. in the manual. The manual says 1 click = 1/4 MOA but if you run a verticle test on the scope you may find that it's actually something slightly different and that the difference may not be linear. That is, it may change depending on the distance to target you're dialing in.
Ballistics charts are estimates. They are not precise and they're only as good as the data entered by the user.
As they say, GIGO.
If you select a G1 BC for your calculations when using a scenar bullet you're going to get incorrect output. Use the G7 BC factor whenever you can.
Get your MV information, naked bullet length, bullet weight, caliber, weather data, rate of twist, bullet BC, zero range and sight height and write it down.
Use the ballistics calculator on this site - it's very good.
Use the Miller formula to calculate stability
http://www.jbmballistics.com/cgi-bin/jbmstab-5.1.cgi ( Output is red for unstable, yellow for marginal stability and green for stable.)
Take your rifle to a range where you can shoot the longest distance possible, select an aim point and move from 100 yards to 200 yards to 300 yards and further if you can, making adjustments that your ballistics chart has provided.
Always use the same aim point for the entire series of five shot strings and mark every shot with the distance it was fired from. If you have to change targets because the holes are so overlapping that they become confusing you can change targets but make sure they are all the same and the aim point is consistent. Don't do anything different than the ballistics chart says and don't change your aim point at any time.
Take your target home, compare the distance from the center of the group you fired at each yardage with the aim point and correct your ballistics dope sheet with the actual data.
Go back to the range and do it all over again. You should have tightened up your accuracy by a good margin.